FedHERO: A Federated Learning Approach for Node Classification Task on Heterophilic Graphs

Federated Graph Learning (FGL) empowers clients to collaboratively train Graph neural networks (GNNs) in a distributed manner while preserving data privacy. However, FGL methods usually require that the graph data owned by all clients is homophilic to ensure similar neighbor distribution patterns of nodes. Such an assumption ensures that the learned knowledge is consistent across the local models from all clients. Therefore, these local models can be properly aggregated as a global model without undermining the overall performance. Nevertheless, when the neighbor distribution patterns of nodes vary across different clients (e.g., when clients hold graphs with different levels of heterophily), their local models may gain different and even conflict knowledge from their node-level predictive tasks. Consequently, aggregating these local models usually leads to catastrophic performance deterioration on the global model. To address this challenge, we propose FedHERO, an FGL framework designed to harness and share insights from heterophilic graphs effectively. At the heart of FedHERO is a dual-channel GNN equipped with a structure learner, engineered to discern the structural knowledge encoded in the local graphs. With this specialized component, FedHERO enables the local model for each client to identify and learn patterns that are universally applicable across graphs with different patterns of node neighbor distributions. FedHERO not only enhances the performance of individual client models by leveraging both local and shared structural insights but also sets a new precedent in this field to effectively handle graph data with various node neighbor distribution patterns. We conduct extensive experiments to validate the superior performance of FedHERO against existing alternatives.

GLIP-OOD: Zero-Shot Graph OOD Detection with Foundation Model

Out-of-distribution (OOD) detection is critical for ensuring the safety and reliability of machine learning systems, particularly in dynamic and open-world environments. In the vision and text domains, zero-shot OOD detection - which requires no training on in-distribution (ID) data - has made significant progress through the use of large-scale pretrained models such as vision-language models (VLMs) and large language models (LLMs). However, zero-shot OOD detection in graph-structured data remains largely unexplored, primarily due to the challenges posed by complex relational structures and the absence of powerful, large-scale pretrained models for graphs. In this work, we take the first step toward enabling zero-shot graph OOD detection by leveraging a graph foundation model (GFM). We show that, when provided only with class label names, the GFM can perform OOD detection without any node-level supervision - outperforming existing supervised methods across multiple datasets. To address the more practical setting where OOD label names are unavailable, we introduce GLIP-OOD, a novel framework that employs LLMs to generate semantically informative pseudo-OOD labels from unlabeled data. These labels enable the GFM to capture nuanced semantic boundaries between ID and OOD classes and perform fine-grained OOD detection - without requiring any labeled nodes. Our approach is the first to enable node-level graph OOD detection in a fully zero-shot setting, and achieves state-of-the-art performance on four benchmark text-attributed graph datasets.

Few-Shot Graph Out-of-Distribution Detection with LLMs

Existing methods for graph out-of-distribution (OOD) detection typically depend on training graph neural network (GNN) classifiers using a substantial amount of labeled in-distribution (ID) data. However, acquiring high-quality labeled nodes in text-attributed graphs (TAGs) is challenging and costly due to their complex textual and structural characteristics. Large language models (LLMs), known for their powerful zero-shot capabilities in textual tasks, show promise but struggle to naturally capture the critical structural information inherent to TAGs, limiting their direct effectiveness. To address these challenges, we propose LLM-GOOD, a general framework that effectively combines the strengths of LLMs and GNNs to enhance data efficiency in graph OOD detection. Specifically, we first leverage LLMs' strong zero-shot capabilities to filter out likely OOD nodes, significantly reducing the human annotation burden. To minimize the usage and cost of the LLM, we employ it only to annotate a small subset of unlabeled nodes. We then train a lightweight GNN filter using these noisy labels, enabling efficient predictions of ID status for all other unlabeled nodes by leveraging both textual and structural information. After obtaining node embeddings from the GNN filter, we can apply informativeness-based methods to select the most valuable nodes for precise human annotation. Finally, we train the target ID classifier using these accurately annotated ID nodes. Extensive experiments on four real-world TAG datasets demonstrate that LLM-GOOD significantly reduces human annotation costs and outperforms state-of-the-art baselines in terms of both ID classification accuracy and OOD detection performance.

ATOM: A Framework of Detecting Query-Based Model Extraction Attacks for Graph Neural Networks

Graph Neural Networks (GNNs) have gained traction in Graph-based Machine Learning as a Service (GMLaaS) platforms, yet they remain vulnerable to graph-based model extraction attacks (MEAs), where adversaries reconstruct surrogate models by querying the victim model. Existing defense mechanisms, such as watermarking and fingerprinting, suffer from poor real-time performance, susceptibility to evasion, or reliance on post-attack verification, making them inadequate for handling the dynamic characteristics of graph-based MEA variants. To address these limitations, we propose ATOM, a novel real-time MEA detection framework tailored for GNNs. ATOM integrates sequential modeling and reinforcement learning to dynamically detect evolving attack patterns, while leveraging $k$-core embedding to capture the structural properties, enhancing detection precision. Furthermore, we provide theoretical analysis to characterize query behaviors and optimize detection strategies. Extensive experiments on multiple real-world datasets demonstrate that ATOM outperforms existing approaches in detection performance, maintaining stable across different time steps, thereby offering a more effective defense mechanism for GMLaaS environments.

ExPath: Towards Explaining Targeted Pathways for Biological Knowledge Bases

Biological knowledge bases provide systemically functional pathways of cells or organisms in terms of molecular interaction. However, recognizing more targeted pathways, particularly when incorporating wet-lab experimental data, remains challenging and typically requires downstream biological analyses and expertise. In this paper, we frame this challenge as a solvable graph learning and explaining task and propose a novel pathway inference framework, ExPath, that explicitly integrates experimental data, specifically amino acid sequences (AA-seqs), to classify various graphs (bio-networks) in biological databases. The links (representing pathways) that contribute more to classification can be considered as targeted pathways. Technically, ExPath comprises three components: (1) a large protein language model (pLM) that encodes and embeds AA-seqs into graph, overcoming traditional obstacles in processing AA-seq data, such as BLAST; (2) PathMamba, a hybrid architecture combining graph neural networks (GNNs) with state-space sequence modeling (Mamba) to capture both local interactions and global pathway-level dependencies; and (3) PathExplainer, a subgraph learning module that identifies functionally critical nodes and edges through trainable pathway masks. We also propose ML-oriented biological evaluations and a new metric. The experiments involving 301 bio-networks evaluations demonstrate that pathways inferred by ExPath maintain biological meaningfulness. We will publicly release curated 301 bio-network data soon.

A Survey of Model Extraction Attacks and Defenses in Distributed Computing Environments

Model Extraction Attacks (MEAs) threaten modern machine learning systems by enabling adversaries to steal models, exposing intellectual property and training data. With the increasing deployment of machine learning models in distributed computing environments, including cloud, edge, and federated learning settings, each paradigm introduces distinct vulnerabilities and challenges. Without a unified perspective on MEAs across these distributed environments, organizations risk fragmented defenses, inadequate risk assessments, and substantial economic and privacy losses. This survey is motivated by the urgent need to understand how the unique characteristics of cloud, edge, and federated deployments shape attack vectors and defense requirements. We systematically examine the evolution of attack methodologies and defense mechanisms across these environments, demonstrating how environmental factors influence security strategies in critical sectors such as autonomous vehicles, healthcare, and financial services. By synthesizing recent advances in MEAs research and discussing the limitations of current evaluation practices, this survey provides essential insights for developing robust and adaptive defense strategies. Our comprehensive approach highlights the importance of integrating protective measures across the entire distributed computing landscape to ensure the secure deployment of machine learning models.

Harnessing Large Language Models for Disaster Management: A Survey

Large language models (LLMs) have revolutionized scientific research with their exceptional capabilities and transformed various fields. Among their practical applications, LLMs have been playing a crucial role in mitigating threats to human life, infrastructure, and the environment. Despite growing research in disaster LLMs, there remains a lack of systematic review and in-depth analysis of LLMs for natural disaster management. To address the gap, this paper presents a comprehensive survey of existing LLMs in natural disaster management, along with a taxonomy that categorizes existing works based on disaster phases and application scenarios. By collecting public datasets and identifying key challenges and opportunities, this study aims to guide the professional community in developing advanced LLMs for disaster management to enhance the resilience against natural disasters.

KG-CF: Knowledge Graph Completion with Context Filtering under the Guidance of Large Language Models

Large Language Models (LLMs) have shown impressive performance in various tasks, including knowledge graph completion (KGC). However, current studies mostly apply LLMs to classification tasks, like identifying missing triplets, rather than ranking-based tasks, where the model ranks candidate entities based on plausibility. This focus limits the practical use of LLMs in KGC, as real-world applications prioritize highly plausible triplets. Additionally, while graph paths can help infer the existence of missing triplets and improve completion accuracy, they often contain redundant information. To address these issues, we propose KG-CF, a framework tailored for ranking-based KGC tasks. KG-CF leverages LLMs' reasoning abilities to filter out irrelevant contexts, achieving superior results on real-world datasets. The code and datasets are available at \url{https://anonymous.4open.science/r/KG-CF}.

BrainMAP: Learning Multiple Activation Pathways in Brain Networks

Functional Magnetic Resonance Image (fMRI) is commonly employed to study human brain activity, since it offers insight into the relationship between functional fluctuations and human behavior. To enhance analysis and comprehension of brain activity, Graph Neural Networks (GNNs) have been widely applied to the analysis of functional connectivities (FC) derived from fMRI data, due to their ability to capture the synergistic interactions among brain regions. However, in the human brain, performing complex tasks typically involves the activation of certain pathways, which could be represented as paths across graphs. As such, conventional GNNs struggle to learn from these pathways due to the long-range dependencies of multiple pathways. To address these challenges, we introduce a novel framework BrainMAP to learn Multiple Activation Pathways in Brain networks. BrainMAP leverages sequential models to identify long-range correlations among sequentialized brain regions and incorporates an aggregation module based on Mixture of Experts (MoE) to learn from multiple pathways. Our comprehensive experiments highlight BrainMAP's superior performance. Furthermore, our framework enables explanatory analyses of crucial brain regions involved in tasks. Our code is provided at https://github.com/LzyFischer/Graph-Mamba.

ST-FiT: Inductive Spatial-Temporal Forecasting with Limited Training Data

Spatial-temporal graphs are widely used in a variety of real-world applications. Spatial-Temporal Graph Neural Networks (STGNNs) have emerged as a powerful tool to extract meaningful insights from this data. However, in real-world applications, most nodes may not possess any available temporal data during training. For example, the pandemic dynamics of most cities on a geographical graph may not be available due to the asynchronous nature of outbreaks. Such a phenomenon disagrees with the training requirements of most existing spatial-temporal forecasting methods, which jeopardizes their effectiveness and thus blocks broader deployment. In this paper, we propose to formulate a novel problem of inductive forecasting with limited training data. In particular, given a spatial-temporal graph, we aim to learn a spatial-temporal forecasting model that can be easily generalized onto those nodes without any available temporal training data. To handle this problem, we propose a principled framework named ST-FiT. ST-FiT consists of two key learning components: temporal data augmentation and spatial graph topology learning. With such a design, ST-FiT can be used on top of any existing STGNNs to achieve superior performance on the nodes without training data. Extensive experiments verify the effectiveness of ST-FiT in multiple key perspectives.